Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX340362: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-146485' containing sample 'Escherichia coli HVH 173 (3-9175482)'
2 ILLUMINA (Illumina HiSeq 2000) runs: 3.7M spots, 748.7M bases, 412.5Mb downloads

UUID: 42b03d1b-5ec4-40f0-b89b-71d1b36f69cc

Design: jumping library

Submitted by: Broad Institute (BI)

Study: E coli UTI Bacteremia

PRJNA186202 • SRP019133 • All experiments • All runs

Sample: Pathogen bacterial, clinical or host-associated sample from Escherichia coli HVH 173 (3-9175482)

SAMN01885815 • SRS399681 • All experiments • All runs

Organism: Escherichia coli HVH 173 (3-9175482)

Library:

Name: Solexa-146485

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 12 attributes...) (hide...)

analysis_type: AssemblyWithReference

gssr_id: 294909.0

library_type: IlluminaStufferlessJump

lsid: broadinstitute.org:bsp.prod.sample:3YT7U

material_type: DNA:DNA Somatic

product_order: PDO-291

product_part_number: P-MCV-0001

project: G30100

research_project: RP-192

root_sample_id: SM-2TD2A

sample_id: SM-3YT7U

work_request: 35511

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-05-09 06:21:59.0	GAPipeline	RTA1.15.19.5	Sequencer Application 1.6.8.6

Runs: 2 runs, 3.7M spots, 748.7M bases, 412.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR958321	1,839,534	371.6M	204Mb	2013-08-28
SRR958322	1,866,819	377.1M	208.5Mb	2013-08-28

ID:: 478146

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